OsisiFam
| Isiokwu nlebanya | phylogenetic tree  |
|---|---|
| webụsaịtị | http://www.treefam.org |
OsisiFam (data data ezinụlọ osisi) bụ nchekwa data nke osisi phylogenetic nke mkpụrụ ndụ ihe nketa anụmanụ. Ebumnuche ya bụ ịzụlite ihe onwunwe a haziri ahazi nke na-enye ozi a pụrụ ịdabere na ya gbasara ọrụ ortholog na paralog, na akụkọ ihe mere eme nke ezinụlọ dị iche iche.[1][2]
OsisiFam na-akọwa ezinụlọ mkpụrụ ndụ ihe nketa dị ka otu ìgwè mkpụrụ ndụ ihe ndụ nke malitere mgbe ụdị anụmanụ nwere otu metazoan. Ọ na agbalịkwa itinye mkpụrụ ndụ ihe nketa ndị ọzọ dị ka yeast (S.cerevisiae na S. pombe) na osisi (A. thaliana) iji kpughee ndị a dị anya.
OsisiFam bụkwa nchekwa data ortholog. N'adịghị ka ndị ọzọ na-adabere na nhazi abụọ, OsisiFam na-ewepụta orthologs site na osisi mkpụrụ ndụ ihe nketa. Ọ na-adaba na osisi mkpụrụ ndụ ihe nketa n'ime osisi ụdị zuru ụwa ọnụ ma chọta akụkọ ihe mere eme, ụdị na ihe ndị furu efu. OsisiFam na-eji ozi a nyochaa owuwu osisi, iduzi ọgwụgwọ aka, ma chọpụta mmekọrịta ortholog na paralog dị mgbagwoju anya.
Ihe ndị bụ isi nke OsisiFam bụ ezinụlọ mkpụrụ ndụ ihe nketa nke enwere ike kewaa n'akụkụ abụọ: OsisiFam A na OsisiFam-B. A na-emepụta ezinụlọ OsisiFam-B na-akpaghị aka. Ha nwere ike ịnwe njehie nyere phylogenies dị mgbagwoju anya. A na-eji aka edozi ezinụlọ OsisiFam-A site na ndị OsisiFam. A na-enye aha ezinụlọ na aha node n'otu oge. Ebumnuche kachasị nke OsisiFam bụ igosi ihe onwunwe a haziri ahazi maka ezinụlọ niile.
A na-agba OsisiFam dị ka ọrụ na Wellcome Trust Sanger Institute, a na-etinye ngwanrọ ya na SourceForge dị ka "OsisiSoft".
Hụkwa
dezie- Homology (biology)
- HomoloGene
- Phylogenetics
- OrthoDB
- Orthologous MAtrix (OMA)
- Inparanoid
Ihe odide
dezie- ↑ Ruan (2007). "TreeFam: 2008 Update". Nucleic Acids Research 36 (Database issue): D735–D740. DOI:10.1093/nar/gkm1005. PMID 18056084.
- ↑ Li (2006). "TreeFam: A curated database of phylogenetic trees of animal gene families". Nucleic Acids Research 34 (90001): D572–D580. DOI:10.1093/nar/gkj118. PMID 16381935.